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LINC00850 long intergenic non-protein coding RNA 850 [ Homo sapiens (human) ]

Gene ID: 101241891, updated on 10-Oct-2023

Summary

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Official Symbol
LINC00850provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 850provided by HGNC
Primary source
HGNC:HGNC:45092
See related
Ensembl:ENSG00000280752 MIM:300892; AllianceGenome:HGNC:45092
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
KUCG1
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC00850 in Genome Data Viewer
Location:
Xq28
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (149825708..149879799)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (148091455..148145497)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (148958633..149008599)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene MAGE family member A7, pseudogene Neighboring gene deoxyuridine triphosphatase pseudogene 4 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 30017 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 30018 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 30019 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 30020 Neighboring gene MAGEA8 antisense RNA 1 Neighboring gene MAGE family member A8 Neighboring gene endothelium and lymphocyte associated ASCH domain 2 Neighboring gene heat shock transcription factor family, X-linked member 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Molecular characterization of an X(p21.2;q28) chromosomal inversion in a Duchenne muscular dystrophy patient with mental retardation reveals a novel long non-coding gene on Xq28. Tran TH, et al. J Hum Genet, 2013 Jan. PMID 23223008

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_109813.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    JX283354
    Related
    ENST00000629221.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    149825708..149879799
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    148091455..148145497
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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