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Uchl1os ubiquitin carboxy-terminal hydrolase L1, opposite strand [ Mus musculus (house mouse) ]

Gene ID: 101202684, updated on 11-Apr-2024

Summary

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Official Symbol
Uchl1osprovided by MGI
Official Full Name
ubiquitin carboxy-terminal hydrolase L1, opposite strandprovided by MGI
Primary source
MGI:MGI:5446771
See related
Ensembl:ENSMUSG00000087601 AllianceGenome:MGI:5446771
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm16832; Uchl1as
Summary
Involved in cellular response to xenobiotic stimulus and positive regulation of polysome binding activity. Acts upstream of or within with a positive effect on translation. Located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in CNS E18 (RPKM 25.1), CNS E14 (RPKM 17.2) and 10 other tissues See more
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Genomic context

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Location:
5 C3.1; 5 35.73 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (66783838..66833840, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (66626495..66676497, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_13290 Neighboring gene STARR-seq mESC enhancer starr_13291 Neighboring gene NOL1/NOP2/Sun domain family, member 7 Neighboring gene amyloid beta precursor protein binding family B member 2 Neighboring gene STARR-seq mESC enhancer starr_13293 Neighboring gene STARR-seq mESC enhancer starr_13294 Neighboring gene predicted gene, 52775 Neighboring gene STARR-seq mESC enhancer starr_13303 Neighboring gene STARR-seq mESC enhancer starr_13304 Neighboring gene ubiquitin carboxy-terminal hydrolase L1 Neighboring gene LIM and calponin homology domains 1 Neighboring gene STARR-seq mESC enhancer starr_13305 Neighboring gene STARR-seq mESC enhancer starr_13306 Neighboring gene predicted gene 6517 Neighboring gene eukaryotic translation elongation factor 1 gamma pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat. Carrieri C, et al. Nature, 2012 Nov 15. PMID 23064229
  2. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • Uchl1 antisense RNA (head to head)
  • Uchl1 opposite strand transcript (head to head)

Gene Ontology Provided by MGI

Process Evidence Code Pubs
involved_in cellular response to xenobiotic stimulus IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within_positive_effect translation IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_102714.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK078321
    Related
    ENSMUST00000152002.4

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    66783838..66833840 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases