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TPRKBP1 TP53RK binding protein pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 101060176, updated on 10-Oct-2023

Summary

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Official Symbol
TPRKBP1provided by HGNC
Official Full Name
TP53RK binding protein pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:44943
See related
Ensembl:ENSG00000231911 AllianceGenome:HGNC:44943
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
10p12.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (28658979..28659529)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (28690370..28690920)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (28947908..28948458)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:28821447-28822130 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2253 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2254 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2255 Neighboring gene WW domain containing adaptor with coiled-coil Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2256 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr10:28943960-28944522 Neighboring gene RNA, U4atac small nuclear 6, pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:28946775-28947338 Neighboring gene NANOG hESC enhancer GRCh37_chr10:28957669-28958170 Neighboring gene RNA, U6 small nuclear 1067, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2257 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:28967203-28967347 Neighboring gene BMP and activin membrane bound inhibitor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_051485.1 

    Range
    101..651
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    28658979..28659529
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    28690370..28690920
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases