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NPIPA7 nuclear pore complex interacting protein family member A7 [ Homo sapiens (human) ]

Gene ID: 101059938, updated on 8-Nov-2023

Summary

Official Symbol
NPIPA7provided by HGNC
Official Full Name
nuclear pore complex interacting protein family member A7provided by HGNC
Primary source
HGNC:HGNC:41982
See related
Ensembl:ENSG00000214967 AllianceGenome:HGNC:41982
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NPIPA8
Summary
Located in nucleoplasm. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in skin (RPKM 37.5), ovary (RPKM 28.3) and 25 other tissues See more
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Genomic context

Location:
16p13.11
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (16379140..16393972)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (16391364..16406190)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (16472997..16487829)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene PKD1P1-NPIPA5L readthrough Neighboring gene polycystin 1, transient receptor potential channel interacting pseudogene 1 Neighboring gene nuclear pore complex interacting protein family, member A6 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:16455057-16455754 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:16462718-16463630 Neighboring gene polycystin 1, transient receptor potential channel interacting pseudogene 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:16464602-16465502 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:16468943-16469444 Neighboring gene microRNA 6511a-3 Neighboring gene phospholipase A2 group XF, pseudogene Neighboring gene uncharacterized LOC105371105

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General protein information

Preferred Names
nuclear pore complex-interacting protein family member A7
Names
Nuclear pore complex-interacting protein family member A8

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001282507.2NP_001269436.1  nuclear pore complex-interacting protein family member A7

    See identical proteins and their annotated locations for NP_001269436.1

    Status: VALIDATED

    Source sequence(s)
    AC136619, AC138969
    Consensus CDS
    CCDS61864.1
    UniProtKB/Swiss-Prot
    E9PJI5, P0DM63
    UniProtKB/TrEMBL
    A0A0J9YW05
    Related
    ENSP00000431814.2, ENST00000530217.3
    Conserved Domains (1) summary
    pfam06409
    Location:22221
    NPIP; Nuclear pore complex interacting protein (NPIP)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    16379140..16393972
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187607.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    2040187..2055014
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    16391364..16406190
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)