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SEC61G-DT SEC61G divergent transcript [ Homo sapiens (human) ]

Gene ID: 100996654, updated on 10-Oct-2023

Summary

Official Symbol
SEC61G-DTprovided by HGNC
Official Full Name
SEC61G divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:40835
See related
Ensembl:ENSG00000234707 AllianceGenome:HGNC:40835
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 1.0), thyroid (RPKM 0.9) and 2 other tissues See more
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Genomic context

See SEC61G-DT in Genome Data Viewer
Location:
7p11.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (54759313..54804969)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (54919239..54964895)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (54827006..54872662)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:54731509-54732224 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:54732225-54732940 Neighboring gene ribosomal protein L31 pseudogene 35 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr7:54742531-54743176 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr7:54743177-54743822 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:54748033-54748601 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18184 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:54827107-54828042 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18185 Neighboring gene SEC61 translocon subunit gamma Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:54847531-54848394 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:54848395-54849258 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:54849259-54850122 Neighboring gene negCOR silencer S2 Neighboring gene uncharacterized LOC124901636 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr7:54898510-54899709 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:54902010-54902201 Neighboring gene Rho GTPase activating protein 5 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110040.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI825781, HY038517
    Related
    ENST00000439413.4

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    54759313..54804969
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    54919239..54964895
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)