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SPTLC1P3 serine palmitoyltransferase long chain base subunit 1 pseudogene 3 [ Homo sapiens (human) ]

Gene ID: 100874499, updated on 10-Oct-2023

Summary

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Official Symbol
SPTLC1P3provided by HGNC
Official Full Name
serine palmitoyltransferase long chain base subunit 1 pseudogene 3provided by HGNC
Primary source
HGNC:HGNC:39670
See related
Ensembl:ENSG00000219940 AllianceGenome:HGNC:39670
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
6q12
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (63227447..63227742)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (64373324..64373619)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (63937352..63937647)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene keratin, type II pseudogene Neighboring gene putative UPF0607 protein ENSP00000383144 pseudogene Neighboring gene FKBP prolyl isomerase family member 1C Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17307 Neighboring gene lengsin, lens protein with glutamine synthetase domain Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:64057036-64058235 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24712 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24713 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24714 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24715 Neighboring gene DENN domain containing 1C pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_032343.2 

    Range
    101..396
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    63227447..63227742
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    64373324..64373619
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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