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HIGD1AP13 HIG1 hypoxia inducible domain family member 1A pseudogene 13 [ Homo sapiens (human) ]

Gene ID: 100874454, updated on 10-Oct-2023

Summary

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Official Symbol
HIGD1AP13provided by HGNC
Official Full Name
HIG1 hypoxia inducible domain family member 1A pseudogene 13provided by HGNC
Primary source
HGNC:HGNC:43008
See related
Ensembl:ENSG00000251019 AllianceGenome:HGNC:43008
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
4q21.21
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (78648984..78649251, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (81984563..81984830, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (79570138..79570405, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124900721 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21643 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21644 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21645 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21646 Neighboring gene small nucleolar RNA U13 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:79566785-79567984 Neighboring gene long intergenic non-protein coding RNA 1094 Neighboring gene CRISPRi-validated cis-regulatory element chr4.1973 Neighboring gene CRISPRi-validated cis-regulatory element chr4.1974 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:79627314-79627946 Neighboring gene OCT4-H3K27ac hESC enhancer GRCh37_chr4:79635971-79636917 Neighboring gene uncharacterized LOC101928893 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:79639668-79640239 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr4:79640240-79640810 Neighboring gene Sharpr-MPRA regulatory region 1360 Neighboring gene CRISPRi-validated cis-regulatory element chr4.1978 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:79643097-79643668 Neighboring gene CRISPRi-validated cis-regulatory element chr4.1979 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15511 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21649 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21650 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21651 Neighboring gene ribosomal protein S21 pseudogene 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_032548.1 

    Range
    101..368
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    78648984..78649251 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    81984563..81984830 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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