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HMGN1P35 high mobility group nucleosome binding domain 1 pseudogene 35 [ Homo sapiens (human) ]

Gene ID: 100874448, updated on 10-Oct-2023

Summary

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Official Symbol
HMGN1P35provided by HGNC
Official Full Name
high mobility group nucleosome binding domain 1 pseudogene 35provided by HGNC
Primary source
HGNC:HGNC:39379
See related
AllianceGenome:HGNC:39379
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See HMGN1P35 in Genome Data Viewer
Location:
Xq13.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (69174010..69174916)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (67607392..67608298)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (68393853..68394759)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985646 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:68359013-68359935 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:68359936-68360857 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chrX:68369986-68371185 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:68378265-68378764 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:68409565-68410066 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:68410067-68410566 Neighboring gene long intergenic non-protein coding RNA 269 Neighboring gene praja ring finger ubiquitin ligase 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:68437057-68437556 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:68442199-68442970 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:68475969-68476469 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:68476955-68477456 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chrX:68482961-68483512 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrX:68483513-68484063 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrX:68484064-68484614 Neighboring gene ReSE screen-validated silencer GRCh37_chrX:68500351-68500533 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:68505841-68506822 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chrX:68509810-68510701 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:68513310-68513810 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:68513811-68514311 Neighboring gene NANOG hESC enhancer GRCh37_chrX:68525339-68525849 Neighboring gene NANOG hESC enhancer GRCh37_chrX:68597698-68598220 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20887 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:68668613-68669113 Neighboring gene CYCS pseudogene 43

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Retroposed copies of the HMG genes: a window to genome dynamics. Strichman-Almashanu LZ, et al. Genome Res, 2003 May. PMID 12727900, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_032278.2 

    Range
    87..993
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    69174010..69174916
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    67607392..67608298
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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