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LINC01014 long intergenic non-protein coding RNA 1014 [ Homo sapiens (human) ]

Gene ID: 100874330, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01014provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1014provided by HGNC
Primary source
HGNC:HGNC:41353
See related
Ensembl:ENSG00000223941 AllianceGenome:HGNC:41353
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
KCNMB2-IT1
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC01014 in Genome Data Viewer
Location:
3q26.32
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (178419201..178457305)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (181222435..181260539)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (178136989..178175093)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374234 Neighboring gene Sharpr-MPRA regulatory region 11026 Neighboring gene uncharacterized LOC105374235 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:177899843-177900344 Neighboring gene Sharpr-MPRA regulatory region 14541 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr3:177924996-177925652 Neighboring gene MPRA-validated peak4943 silencer Neighboring gene MPRA-validated peak4945 silencer Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:178061465-178061964 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20848 Neighboring gene RNA, 5S ribosomal pseudogene 148 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20849 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20851 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20850 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20852 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14907 Neighboring gene KCNMB2 antisense RNA 1 Neighboring gene peptidylprolyl isomerase A pseudogene 75 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20853 Neighboring gene potassium calcium-activated channel subfamily M regulatory beta subunit 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20854 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20855 Neighboring gene MPRA-validated peak4947 silencer Neighboring gene uncharacterized LOC124909461

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Linc01014 regulates gefitinib resistance in oesophagus cancer via EGFR-PI3K-AKT-mTOR signalling pathway. Fu X, et al. J Cell Mol Med, 2020 Jan. PMID 31785047, Free PMC Article
  2. The sequence of the human genome. Venter JC, et al. Science, 2001 Feb 16. PMID 11181995

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Linc01014 regulates gefitinib resistance in oesophagus cancer via EGFR-PI3K-AKT-mTOR signalling pathway.
    Title: Linc01014 regulates gefitinib resistance in oesophagus cancer via EGFR-PI3K-AKT-mTOR signalling pathway.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • KCNMB2 intronic transcript 1 (non-protein coding)
  • hCG1646471

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046786.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AC024220
    Related
    ENST00000455307.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    178419201..178457305
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    181222435..181260539
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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