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ATP2B2-IT1 ATP2B2 intronic transcript 1 [ Homo sapiens (human) ]

Gene ID: 100874324, updated on 26-Oct-2023

Summary

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Official Symbol
ATP2B2-IT1provided by HGNC
Official Full Name
ATP2B2 intronic transcript 1provided by HGNC
Primary source
HGNC:HGNC:41309
See related
Ensembl:ENSG00000236999 AllianceGenome:HGNC:41309
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See ATP2B2-IT1 in Genome Data Viewer
Location:
3p25.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (10566255..10570375, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (10560602..10564722, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:10380971-10381538 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:10394060-10394233 Neighboring gene microRNA 378b Neighboring gene ATPase plasma membrane Ca2+ transporting 2 Neighboring gene MPRA-validated peak4536 silencer Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:10436781-10437377 Neighboring gene microRNA 885 Neighboring gene Sharpr-MPRA regulatory region 15222 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:10512164-10512778 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:10512779-10513391 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:10523895-10524396 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:10545926-10546592 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:10546593-10547259 Neighboring gene Sharpr-MPRA regulatory region 781 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:10613143-10613642 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:10638747-10639307 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:10642497-10642998 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:10670941-10671440 Neighboring gene ATP2B2 intronic transcript 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:10749701-10750202 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:10750203-10750702 Neighboring gene MPRA-validated peak4540 silencer Neighboring gene Sharpr-MPRA regulatory region 1605 Neighboring gene long intergenic non-protein coding RNA 606

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

General gene information

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Other Names

  • ATP2B2 intronic transcript 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046765.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC018839
    Related
    ENST00000440152.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    10566255..10570375 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    10560602..10564722 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials