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GPC5-IT1 GPC5 intronic transcript 1 [ Homo sapiens (human) ]

Gene ID: 100874293, updated on 10-Oct-2023

Summary

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Official Symbol
GPC5-IT1provided by HGNC
Official Full Name
GPC5 intronic transcript 1provided by HGNC
Primary source
HGNC:HGNC:41340
See related
AllianceGenome:HGNC:41340
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
13q31.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (92484603..92510320)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (91688046..91713763)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene glypican 5 Neighboring gene NANOG hESC enhancer GRCh37_chr13:92870965-92871466 Neighboring gene fatty acid binding protein 5 pseudogene 4 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:92932846-92933346 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:92933347-92933847 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:92943271-92943775 Neighboring gene GPC5 antisense RNA 2 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:93089056-93089650 Neighboring gene Sharpr-MPRA regulatory region 998 Neighboring gene uncharacterized LOC124903190 Neighboring gene microRNA 548as Neighboring gene uncharacterized LOC105370315

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

General gene information

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Other Names

  • GPC5 intronic transcript 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046779.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL159152

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    92484603..92510320
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    91688046..91713763
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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