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MLIP-IT1 MLIP intronic transcript 1 [ Homo sapiens (human) ]

Gene ID: 100874282, updated on 10-Oct-2023

Summary

Official Symbol
MLIP-IT1provided by HGNC
Official Full Name
MLIP intronic transcript 1provided by HGNC
Primary source
HGNC:HGNC:41461
See related
Ensembl:ENSG00000146147 AllianceGenome:HGNC:41461
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in skin (RPKM 1.8), esophagus (RPKM 0.2) and 1 other tissue See more
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Genomic context

See MLIP-IT1 in Genome Data Viewer
Location:
6p12.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (53998890..54007152)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (53838833..53847090)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (53863688..53871950)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17294 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:53659875-53660587 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17295 Neighboring gene Sharpr-MPRA regulatory region 10889 Neighboring gene leucine rich repeat containing 1 Neighboring gene Sharpr-MPRA regulatory region 6720 Neighboring gene uncharacterized LOC101927189 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:53810369-53810988 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:53810989-53811607 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:53826656-53827156 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:53841998-53842202 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:53848425-53849624 Neighboring gene ERH pseudogene 2 Neighboring gene muscular LMNA interacting protein Neighboring gene MLIP antisense RNA 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Other Names

  • MLIP intronic transcript 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046832.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AL139389
    Related
    ENST00000441845.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    53998890..54007152
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    53838833..53847090
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)