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LINC01216 long intergenic non-protein coding RNA 1216 [ Homo sapiens (human) ]

Gene ID: 100874275, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01216provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1216provided by HGNC
Primary source
HGNC:HGNC:41418
See related
Ensembl:ENSG00000250223 AllianceGenome:HGNC:41418
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
EMCN-IT3
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
4q24
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (100660279..100675113, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (103975560..103990392, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (101581436..101596270, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124900740 Neighboring gene endomucin Neighboring gene uncharacterized LOC105377345 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21745 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:101731907-101732751 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21746 Neighboring gene long intergenic non-protein coding RNA 1217 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_71492 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_71505 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:101887592-101888092 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr4:101907345-101907846 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15589 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21747 Neighboring gene Sharpr-MPRA regulatory region 8198 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:101961837-101962456 Neighboring gene protein phosphatase 3 catalytic subunit alpha Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:102035867-102036688 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15590 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21748 Neighboring gene NANOG hESC enhancer GRCh37_chr4:102076410-102076911 Neighboring gene Sharpr-MPRA regulatory region 422 Neighboring gene microRNA 8066

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • EMCN intronic transcript 3 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046811.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AC034150, AC116174
    Related
    ENST00000515728.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    100660279..100675113 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    103975560..103990392 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases