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JTBP1 jumping translocation breakpoint pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 100874254, updated on 10-Oct-2023

Summary

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Official Symbol
JTBP1provided by HGNC
Official Full Name
jumping translocation breakpoint pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:39180
See related
Ensembl:ENSG00000233603 AllianceGenome:HGNC:39180
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
22q13.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (40798039..40798285)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (41270229..41270475)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (41194043..41194289)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124905123 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:41075515-41076208 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:41076631-41077585 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:41077586-41078539 Neighboring gene Sharpr-MPRA regulatory regions 5578 and 9058 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:41079701-41080396 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:41080397-41081092 Neighboring gene melanin concentrating hormone receptor 1 Neighboring gene Sharpr-MPRA regulatory region 1401 Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:41107927-41108443 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:41109407-41110282 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:41110283-41111157 Neighboring gene ReSE screen-validated silencer GRCh37_chr22:41111979-41112145 Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:41117878-41118491 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:41124025-41124749 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:41124750-41125473 Neighboring gene ReSE screen-validated silencer GRCh37_chr22:41127319-41127477 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13774 Neighboring gene solute carrier family 25 member 17 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:41178069-41178568 Neighboring gene RFK pseudogene 4 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19100 Neighboring gene microRNA 4766 Neighboring gene ST13 Hsp70 interacting protein Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:41252371-41253140

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_032231.1 

    Range
    101..347
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    40798039..40798285
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    41270229..41270475
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases