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ZNF385D-AS2 ZNF385D antisense RNA 2 [ Homo sapiens (human) ]

Gene ID: 100874221, updated on 10-Oct-2023

Summary

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Official Symbol
ZNF385D-AS2provided by HGNC
Official Full Name
ZNF385D antisense RNA 2provided by HGNC
Primary source
HGNC:HGNC:42420
See related
Ensembl:ENSG00000223351 AllianceGenome:HGNC:42420
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
3p24.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (21957139..21979828)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (21967359..21990021)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (21998631..22021320)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:21447352-21447855 Neighboring gene VENT homeobox pseudogene 7 Neighboring gene zinc finger protein 385D Neighboring gene NANOG hESC enhancer GRCh37_chr3:21558661-21559162 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:21584849-21585429 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:21589175-21589999 Neighboring gene ZNF385D antisense RNA 1 Neighboring gene MPRA-validated peak4572 silencer Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68017 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68021 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68035 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68037 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68058 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68089 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68153 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68192 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:22029852-22030429 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68287 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68298 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68318 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:22347885-22348477 Neighboring gene high mobility group box 1 pseudogene 5 Neighboring gene FCRL4 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Low lncRNA ZNF385D‑AS2 expression and its prognostic significance in liver cancer. Zhang Z, et al. Oncol Rep, 2019 Sep. PMID 31322274, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Low lncRNA ZNF385DAS2 expression is associated with liver cancer.
    Title: Low lncRNA ZNF385D‑AS2 expression and its prognostic significance in liver cancer.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • ZNF385D antisense RNA 2 (non-protein coding)

Clone Names

  • AC096918.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046876.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC096918
    Related
    ENST00000436306.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    21957139..21979828
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    21967359..21990021
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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