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MID1IP1-AS1 MID1IP1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100874211, updated on 10-Oct-2023

Summary

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Official Symbol
MID1IP1-AS1provided by HGNC
Official Full Name
MID1IP1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40932
See related
AllianceGenome:HGNC:40932
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in ovary (RPKM 9.5), kidney (RPKM 8.0) and 23 other tissues See more
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Genomic context

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Location:
Xp11.4
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (38801248..38803883, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (38200731..38203366, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (38660501..38663136, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:38420895-38421396 Neighboring gene UBTF like 11 (pseudogene) Neighboring gene tetraspanin 7 Neighboring gene RNA, U7 small nuclear 7 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20736 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29522 Neighboring gene Sharpr-MPRA regulatory region 799 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:38660922-38661429 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:38661763-38662604 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:38662605-38663446 Neighboring gene MID1 interacting protein 1 Neighboring gene uncharacterized LOC124905178 Neighboring gene Sharpr-MPRA regulatory region 8592 Neighboring gene uncharacterized LOC124905177 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29523 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20738

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • MID1IP1 antisense RNA 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046706.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AF241728

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    38801248..38803883 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    38200731..38203366 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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