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COL4A2-AS1 COL4A2 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100874203, updated on 10-Oct-2023

Summary

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Official Symbol
COL4A2-AS1provided by HGNC
Official Full Name
COL4A2 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40156
See related
Ensembl:ENSG00000232814 AllianceGenome:HGNC:40156
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in placenta (RPKM 79.8), fat (RPKM 31.0) and 16 other tissues See more
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Genomic context

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Location:
13q34
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (110502576..110508179, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (109733006..109738610, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (111154923..111160526, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene collagen type IV alpha 2 chain Neighboring gene small nucleolar RNA U13 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7992 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7993 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111098314-111098814 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111098815-111099315 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr13:111100302-111101501 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7994 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111110079-111110888 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111110889-111111697 Neighboring gene COL4A2 antisense RNA 2 Neighboring gene ReSE screen-validated silencer GRCh37_chr13:111122078-111122283 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7995 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7996 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7998 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7997 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111125311-111125885 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111127041-111127679 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7999 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111136580-111137418 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111137419-111138256 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111138257-111139094 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111139095-111139931 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111144038-111144573 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111144574-111145108 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111151293-111151792 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111155195-111156124 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111159947-111160448 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111160449-111160948 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111164263-111164891 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111166617-111167116 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111170170-111171006 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8000 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8001 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8002 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8003 Neighboring gene Sharpr-MPRA regulatory region 8993 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111183105-111183721 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111186543-111187325 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5502 Neighboring gene RAB20, member RAS oncogene family Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111209741-111210264 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111210265-111210787 Neighboring gene ReSE screen-validated silencer GRCh37_chr13:111213668-111213857 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr13:111253624-111254492 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:111262660-111263160 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:111263161-111263661 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111266973-111267900 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5505 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5506 Neighboring gene NAXD antisense RNA 1 Neighboring gene NAD(P)HX dehydratase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Long non-coding RNA COL4A2-AS1 facilitates cell proliferation and glycolysis of colorectal cancer cells via miR-20b-5p/hypoxia inducible factor 1 alpha subunit axis. Yu Z, et al. Bioengineered, 2021 Dec. PMID 34477476, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Long non-coding RNA COL4A2-AS1 facilitates cell proliferation and glycolysis of colorectal cancer cells via miR-20b-5p/hypoxia inducible factor 1 alpha subunit axis.
    Title: Long non-coding RNA COL4A2-AS1 facilitates cell proliferation and glycolysis of colorectal cancer cells via miR-20b-5p/hypoxia inducible factor 1 alpha subunit axis.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • COL4A2 antisense RNA 1 (non-protein coding)

Clone Names

  • DKFZp686L13229

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046583.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL139385
    Related
    ENST00000417970.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    110502576..110508179 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    109733006..109738610 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases