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LINC00457 long intergenic non-protein coding RNA 457 [ Homo sapiens (human) ]

Gene ID: 100874179, updated on 10-Oct-2023

Summary

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Official Symbol
LINC00457provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 457provided by HGNC
Primary source
HGNC:HGNC:42805
See related
Ensembl:ENSG00000225179 AllianceGenome:HGNC:42805
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC00457 in Genome Data Viewer
Location:
13q13.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (34435450..34640685, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (33653637..33858967, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (35009587..35214822, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA25 Neighboring gene NANOG hESC enhancer GRCh37_chr13:34690717-34691499 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr13:34730690-34731889 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:34749741-34750242 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:34750243-34750742 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr13:34798824-34800023 Neighboring gene uncharacterized LOC124903154 Neighboring gene long intergenic non-protein coding RNA 2343 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr13:35196276-35197475 Neighboring gene guanidinoacetate N-methyltransferase pseudogene 2 Neighboring gene uncharacterized LOC105370159 Neighboring gene uncharacterized LOC107987189

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_047036.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI201900, AL138956
    Related
    ENST00000440160.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    34435450..34640685 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    33653637..33858967 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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