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LINC00392 long intergenic non-protein coding RNA 392 [ Homo sapiens (human) ]

Gene ID: 100874155, updated on 10-Oct-2023

Summary

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Official Symbol
LINC00392provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 392provided by HGNC
Primary source
HGNC:HGNC:42720
See related
AllianceGenome:HGNC:42720
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
13q22.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (73564244..73587879)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (72785867..72809488)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (74138381..74162016)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene MARK2 pseudogene 12 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:74096615-74097116 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:74097117-74097616 Neighboring gene uncharacterized LOC105377816 Neighboring gene uncharacterized LOC128966561 Neighboring gene long intergenic non-protein coding RNA 393 Neighboring gene uncharacterized LOC105370256 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:74214267-74214908 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:74214909-74215550 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr13:74289066-74290265 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:74305638-74306208 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr13:74340128-74340628 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:74341622-74342257 Neighboring gene KLF transcription factor 12 Neighboring gene uncharacterized LOC124903182

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_047009.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL160032

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    73564244..73587879
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    72785867..72809488
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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