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ZBTB20-AS4 ZBTB20 antisense RNA 4 [ Homo sapiens (human) ]

Gene ID: 100874131, updated on 10-Oct-2023

Summary

Official Symbol
ZBTB20-AS4provided by HGNC
Official Full Name
ZBTB20 antisense RNA 4provided by HGNC
Primary source
HGNC:HGNC:42423
See related
Ensembl:ENSG00000242767 AllianceGenome:HGNC:42423
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See ZBTB20-AS4 in Genome Data Viewer
Location:
3q13.31
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (115100423..115103061)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (117820896..117823534)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (114819270..114821908)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene zinc finger and BTB domain containing 20 Neighboring gene ZBTB20 antisense RNA 3 Neighboring gene Y-box binding protein 1 pseudogene 3 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20279 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14617 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20281 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14616 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14615 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20280 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20282 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20283 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20284 Neighboring gene VISTA enhancer hs1648 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr3:114958135-114959334 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr3:115003756-115004955 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:115036984-115037582 Neighboring gene eukaryotic translation initiation factor 4E family member 2 pseudogene 2 Neighboring gene uncharacterized LOC105374051

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046877.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    DA196340, DA301952
    Related
    ENST00000472323.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    115100423..115103061
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    117820896..117823534
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)