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UBE2E1-AS1 UBE2E1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100874092, updated on 10-Oct-2023

Summary

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Official Symbol
UBE2E1-AS1provided by HGNC
Official Full Name
UBE2E1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40598
See related
Ensembl:ENSG00000223791 AllianceGenome:HGNC:40598
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
3p24.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (23804024..23806905, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (23808800..23811681, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (23845515..23848396, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105376993 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:23696236-23696419 Neighboring gene uncharacterized LOC124909353 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr3:23709558-23710757 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:23712993-23713494 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:23713495-23713994 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:23743503-23744115 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68903 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:23801884-23802520 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:23802521-23803157 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14139 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14142 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14141 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14140 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14143 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19600 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19601 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14144 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19602 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19603 Neighboring gene ubiquitin conjugating enzyme E2 E1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19604 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19605 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:23906443-23907202 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:23924271-23924855 Neighboring gene ADP ribosylation factor like GTPase 4A pseudogene 4 Neighboring gene NFKB inhibitor interacting Ras like 1 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:23958136-23959335 Neighboring gene ribosomal protein L15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Brain proteins interacting with the tetramerization region of non-erythroid alpha spectrin. Oh Y, et al. Cell Mol Biol Lett, 2007. PMID 17607528, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • UBE2E1 antisense RNA 1 (non-protein coding)

Clone Names

  • AC020626.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046652.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC020626
    Related
    ENST00000426702.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    23804024..23806905 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    23808800..23811681 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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