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PCDH9-AS1 PCDH9 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100874065, updated on 26-Oct-2023

Summary

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Official Symbol
PCDH9-AS1provided by HGNC
Official Full Name
PCDH9 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:39897
See related
Ensembl:ENSG00000234527 AllianceGenome:HGNC:39897
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
13q21.32
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (66303871..66323561)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (65523804..65543491)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:66798584-66799108 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:66799109-66799633 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:66800429-66801145 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:66804949-66805878 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:66805879-66806808 Neighboring gene uncharacterized LOC124903179 Neighboring gene microRNA 4704 Neighboring gene tripartite motif containing 60 pseudogene 19 Neighboring gene NANOG hESC enhancer GRCh37_chr13:66918798-66919386 Neighboring gene protocadherin 9 Neighboring gene NANOG hESC enhancer GRCh37_chr13:67104803-67105304 Neighboring gene uncharacterized LOC105370247 Neighboring gene Sharpr-MPRA regulatory region 12707 Neighboring gene RNA, U7 small nuclear 87 pseudogene Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr13:67311857-67312463 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:67422445-67422946 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:67422947-67423446 Neighboring gene PCDH9 antisense RNA 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

General gene information

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Other Names

  • PCDH9 antisense RNA 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046528.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL355173
    Related
    ENST00000430861.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    66303871..66323561
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    65523804..65543491
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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