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JRKL-AS1 JRKL antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100874053, updated on 10-Oct-2023

Summary

Official Symbol
JRKL-AS1provided by HGNC
Official Full Name
JRKL antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:43670
See related
AllianceGenome:HGNC:43670
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See JRKL-AS1 in Genome Data Viewer
Location:
11q21
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (96443281..96506876, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (96449296..96512578, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (96176445..96240040, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 82 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3855 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:96143892-96144538 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:96144539-96145185 Neighboring gene JRK like Neighboring gene ReSE screen-validated silencer GRCh37_chr11:96160777-96160989 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:96205677-96206178 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:96206179-96206678 Neighboring gene RNA, 5S ribosomal pseudogene 346 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:96220661-96221455 Neighboring gene long intergenic non-protein coding RNA 2737 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancers GRCh37_chr11:96457069-96457656 and GRCh37_chr11:96457657-96458244 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:96463619-96464262 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr11:96464263-96464904 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:96479048-96479664 Neighboring gene AKTIP pseudogene 3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_047481.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP003781

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    96443281..96506876 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    96449296..96512578 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)