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HM13-AS1 HM13 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100874042, updated on 10-Oct-2023

Summary

Official Symbol
HM13-AS1provided by HGNC
Official Full Name
HM13 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:41940
See related
Ensembl:ENSG00000230613 AllianceGenome:HGNC:41940
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in bone marrow (RPKM 2.5), liver (RPKM 0.9) and 25 other tissues See more
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Genomic context

See HM13-AS1 in Genome Data Viewer
Location:
20q11.21
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (31567587..31573263, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (33291812..33297488, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (30155390..30161066, complement)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12757 Neighboring gene CD24 molecule pseudogene 3 Neighboring gene histocompatibility minor 13 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr20:30134937-30136136 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:30137639-30138140 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:30138141-30138640 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:30142553-30143052 Neighboring gene MCTS family member 2 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr20:30148388-30149587 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:30153591-30154466 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:30154467-30155342 Neighboring gene Sharpr-MPRA regulatory region 9809 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:30160423-30160964 Neighboring gene uncharacterized LOC107985416 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:30162848-30163017 Neighboring gene RNA, U6 small nuclear 384, pseudogene Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr20:30172998-30173500 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr20:30173501-30174004 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:30175011-30175512 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr20:30178306-30178806 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr20:30178807-30179307 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:30180469-30181234 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:30182001-30182766 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancers GRCh37_chr20:30182767-30183531 and GRCh37_chr20:30183532-30184297 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:30185063-30185828 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:30185829-30186593 Neighboring gene Sharpr-MPRA regulatory region 14532 Neighboring gene VISTA enhancer hs480 Neighboring gene uncharacterized LOC105372588 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:30192859-30193529

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046853.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AJ710081, AL110115
    Related
    ENST00000412178.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    31567587..31573263 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    33291812..33297488 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)