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PRKX-AS1 PRKX antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100873944, updated on 10-Oct-2023

Summary

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Official Symbol
PRKX-AS1provided by HGNC
Official Full Name
PRKX antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40479
See related
Ensembl:ENSG00000236188 AllianceGenome:HGNC:40479
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See PRKX-AS1 in Genome Data Viewer
Location:
Xp22.33
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (3659487..3668192)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (3278877..3287594)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (3577528..3586233)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene RNA, U6 small nuclear 114, pseudogene Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:3509707-3510638 Neighboring gene RNA, U6 small nuclear 146, pseudogene Neighboring gene protein kinase cAMP-dependent X-linked catalytic subunit Neighboring gene Sharpr-MPRA regulatory region 13686 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29374 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chrX:3620023-3620624 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:3629037-3629558 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29375 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29376 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20640 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20641 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20642 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:3632955-3633602 Neighboring gene RPS27A pseudogene 20 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chrX:3650386-3651585 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20643 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20644 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29377 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20645 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20646 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20647 Neighboring gene uncharacterized LOC124900487 Neighboring gene zinc finger protein 839 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • PRKX antisense RNA 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046643.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007685
    Related
    ENST00000414074.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    3659487..3668192
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    3278877..3287594
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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