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HMGB3P14 high mobility group box 3 pseudogene 14 [ Homo sapiens (human) ]

Gene ID: 100873899, updated on 10-Oct-2023

Summary

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Official Symbol
HMGB3P14provided by HGNC
Official Full Name
high mobility group box 3 pseudogene 14provided by HGNC
Primary source
HGNC:HGNC:39306
See related
Ensembl:ENSG00000231845 AllianceGenome:HGNC:39306
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
3q22.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (134170444..134171099)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (136915554..136916209)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (133889288..133889943)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:133774934-133775740 Neighboring gene uncharacterized LOC105374117 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:133784850-133785350 Neighboring gene long intergenic non-protein coding RNA 2000 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:133786727-133787227 Neighboring gene receptor like tyrosine kinase Neighboring gene Sharpr-MPRA regulatory region 4898 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:133968944-133969720 Neighboring gene Sharpr-MPRA regulatory region 8229 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:134032557-134033130 Neighboring gene uncharacterized LOC105374118 Neighboring gene Sharpr-MPRA regulatory regions 684 and 10996 Neighboring gene long intergenic non-protein coding RNA 2004

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Retroposed copies of the HMG genes: a window to genome dynamics. Strichman-Almashanu LZ, et al. Genome Res, 2003 May. PMID 12727900, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_032246.3 

    Range
    101..756
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    134170444..134171099
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    136915554..136916209
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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