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RNA5SP486 RNA, 5S ribosomal pseudogene 486 [ Homo sapiens (human) ]

Gene ID: 100873728, updated on 10-Oct-2023

Summary

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Official Symbol
RNA5SP486provided by HGNC
Official Full Name
RNA, 5S ribosomal pseudogene 486provided by HGNC
Primary source
HGNC:HGNC:43386
See related
Ensembl:ENSG00000251770 AllianceGenome:HGNC:43386
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RN5S486
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Genomic context

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Location:
20q13.13
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (47873191..47873273)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (49622015..49622097)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (46501935..46502017)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372636 Neighboring gene MPRA-validated peak4235 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12981 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18009 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18010 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:46496687-46497217 Neighboring gene SRM pseudogene 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:46523130-46524066 Neighboring gene RNA, U7 small nuclear 92 pseudogene Neighboring gene uncharacterized LOC105372637 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:46579981-46580540 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:46581153-46581653

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • RNA, 5S ribosomal 486

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_033281.1 

    Range
    101..183
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    47873191..47873273
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    49622015..49622097
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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