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RNA5SP390 RNA, 5S ribosomal pseudogene 390 [ Homo sapiens (human) ]

Gene ID: 100873643, updated on 10-Oct-2023

Summary

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Official Symbol
RNA5SP390provided by HGNC
Official Full Name
RNA, 5S ribosomal pseudogene 390provided by HGNC
Primary source
HGNC:HGNC:43290
See related
Ensembl:ENSG00000222123 AllianceGenome:HGNC:43290
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RN5S390
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Genomic context

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Location:
15q12
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (25738508..25738620)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (23476278..23476390)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (25983655..25983767)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2250 Neighboring gene uncharacterized LOC107984789 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr15:25808594-25809158 Neighboring gene uncharacterized LOC124903448 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:25888031-25888974 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:25895885-25896385 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:25917854-25918562 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:25918563-25919270 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:25940327-25940827 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:25941814-25942360 Neighboring gene ATPase phospholipid transporting 10A (putative) Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:26014919-26015420 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9163 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:26047324-26047457 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:26047665-26048164 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:26056572-26057072 Neighboring gene uncharacterized LOC107984770 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:26082467-26082968 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:26082969-26083468 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:26090222-26091063 Neighboring gene microRNA 4715

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • RNA, 5S ribosomal 390

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_033557.1 

    Range
    101..213
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    25738508..25738620
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    23476278..23476390
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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