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RNA5SP344 RNA, 5S ribosomal pseudogene 344 [ Homo sapiens (human) ]

Gene ID: 100873606, updated on 10-Oct-2023

Summary

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Official Symbol
RNA5SP344provided by HGNC
Official Full Name
RNA, 5S ribosomal pseudogene 344provided by HGNC
Primary source
HGNC:HGNC:43244
See related
Ensembl:ENSG00000223013 AllianceGenome:HGNC:43244
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RN5S344
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Genomic context

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Location:
11q13.5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (75934936..75935039)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (75864679..75864782)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (75645980..75646083)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr11:75524366-75525565 Neighboring gene Sharpr-MPRA regulatory region 8 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3777 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5280 Neighboring gene UVRAG divergent transcript Neighboring gene UV radiation resistance associated Neighboring gene Sharpr-MPRA regulatory region 15578 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:75584619-75585120 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5281 Neighboring gene protein phosphatase 1 regulatory inhibitor subunit 1A pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5282 Neighboring gene MPRA-validated peak1353 silencer Neighboring gene VISTA enhancer hs1435 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:75769360-75769545 Neighboring gene NANOG hESC enhancer GRCh37_chr11:75831587-75832314 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:75863001-75863881 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5284 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:75875819-75876512 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:75886811-75887552 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:75887553-75888295 Neighboring gene Sharpr-MPRA regulatory region 10154 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:75895382-75896163 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:75896164-75896944 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:75897726-75898505 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3778 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:75918003-75918670 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3779 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:75920005-75920671 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:75920672-75921338 Neighboring gene uncharacterized LOC112268079 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3780 Neighboring gene long intergenic non-protein coding RNA 2761 Neighboring gene Wnt family member 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • RNA, 5S ribosomal 344

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_033489.1 

    Range
    101..204
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    75934936..75935039
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    75864679..75864782
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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