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RNA5SP322 RNA, 5S ribosomal pseudogene 322 [ Homo sapiens (human) ]

Gene ID: 100873588, updated on 10-Oct-2023

Summary

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Official Symbol
RNA5SP322provided by HGNC
Official Full Name
RNA, 5S ribosomal pseudogene 322provided by HGNC
Primary source
HGNC:HGNC:43222
See related
Ensembl:ENSG00000200487 AllianceGenome:HGNC:43222
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RN5S322
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Genomic context

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Location:
10q23.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (86052448..86052566)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (86932523..86932641)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (87812205..87812323)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378404 Neighboring gene GRID1 antisense RNA 1 Neighboring gene glutamate ionotropic receptor delta type subunit 1 Neighboring gene RN7SK pseudogene 238 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:87529073-87529574 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:87529575-87530074 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3682 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:87818313-87818519 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:87851089-87851613 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:87864301-87864801 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:87894862-87895400 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:87938795-87939294 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:87938293-87938794 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:87965696-87966220 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:87966221-87966744 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:87986763-87987262 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:87992997-87993662 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:88021719-88022702 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:88022703-88023686 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:88024064-88024564 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_17795 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:88051976-88052790 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:88051161-88051975 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:88057946-88058446 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:88089455-88090419 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:88091551-88092052 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:88092053-88092552 Neighboring gene microRNA 346 Neighboring gene Sharpr-MPRA regulatory region 9256 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:88122633-88123146 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:88123147-88123660 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2559 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2560 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2558 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2557 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2556 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:88136831-88137373 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2563 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3683 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3684 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3685 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:88159531-88160524 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:88160525-88161518 Neighboring gene uncharacterized LOC124902473 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:88162319-88162871

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • RNA, 5S ribosomal 322

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_033468.1 

    Range
    101..219
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    86052448..86052566
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    86932523..86932641
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases