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RNA5SP500 RNA, 5S ribosomal pseudogene 500 [ Homo sapiens (human) ]

Gene ID: 100873551, updated on 10-Oct-2023

Summary

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Official Symbol
RNA5SP500provided by HGNC
Official Full Name
RNA, 5S ribosomal pseudogene 500provided by HGNC
Primary source
HGNC:HGNC:43400
See related
Ensembl:ENSG00000201356 AllianceGenome:HGNC:43400
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RN5S500
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Genomic context

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See RNA5SP500 in Genome Data Viewer
Location:
Xp21.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (28982852..28982970, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (28574849..28574967, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (29000969..29001087, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene interleukin 1 receptor accessory protein like 1 Neighboring gene H3 histone pseudogene 43 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:28861828-28862380 Neighboring gene uncharacterized LOC124900494 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:29173264-29174047 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:29194297-29194796 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:29243546-29244419 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:29315145-29315868 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:29326788-29327495 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:29328205-29328911 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:29327496-29328204 Neighboring gene NANOG hESC enhancer GRCh37_chrX:29440069-29440570 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20722 Neighboring gene microRNA 4666b Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chrX:29679893-29681092 Neighboring gene NANOG hESC enhancer GRCh37_chrX:29749637-29750178 Neighboring gene uncharacterized LOC124905284

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • RNA, 5S ribosomal 500

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_033394.1 

    Range
    101..219
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    28982852..28982970 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    28574849..28574967 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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