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RNA5SP293 RNA, 5S ribosomal pseudogene 293 [ Homo sapiens (human) ]

Gene ID: 100873546, updated on 10-Oct-2023

Summary

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Official Symbol
RNA5SP293provided by HGNC
Official Full Name
RNA, 5S ribosomal pseudogene 293provided by HGNC
Primary source
HGNC:HGNC:43193
See related
Ensembl:ENSG00000222459 AllianceGenome:HGNC:43193
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RN5S293
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Genomic context

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See RNA5SP293 in Genome Data Viewer
Location:
9q31.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (107918866..107918978, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (120087383..120087495, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (110681147..110681259, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene ribosomal protein L36a pseudogene 6 Neighboring gene small EDRK-rich factor 2-like Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:110634669-110635552 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28753 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28754 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28755 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_104396 Neighboring gene melanoma risk locus-associated MPRA allelic enhancers 9:110702889 and 9:110702983 Neighboring gene melanoma risk locus-associated MPRA allelic enhancer 9:110708974 Neighboring gene ribosomal protein S15a pseudogene 27 Neighboring gene uncharacterized LOC107987112 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr9:110762694-110763893 Neighboring gene uncharacterized LOC124902243 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr9:110779148-110780347

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • RNA, 5S ribosomal 293

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_033384.1 

    Range
    101..213
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    107918866..107918978 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    120087383..120087495 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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