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RNA5SP279 RNA, 5S ribosomal pseudogene 279 [ Homo sapiens (human) ]

Gene ID: 100873532, updated on 10-Oct-2023

Summary

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Official Symbol
RNA5SP279provided by HGNC
Official Full Name
RNA, 5S ribosomal pseudogene 279provided by HGNC
Primary source
HGNC:HGNC:43179
See related
Ensembl:ENSG00000202383 AllianceGenome:HGNC:43179
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RN5S279
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Genomic context

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Location:
9p24.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (1333837..1333953)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (1335525..1335641)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (1333837..1333953)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:1050129-1050998 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:1083793-1084293 Neighboring gene doublesex and mab-3 related transcription factor 2 Neighboring gene Sharpr-MPRA regulatory region 3102 Neighboring gene RPS27A pseudogene 14 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:1224129-1224749 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28122 Neighboring gene NANOG hESC enhancer GRCh37_chr9:1273747-1274248 Neighboring gene uncharacterized LOC102723803 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28123 Neighboring gene OCT4 hESC enhancer GRCh37_chr9:1515455-1515956 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28124 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28125 Neighboring gene uncharacterized LOC105375951 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28126 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28127 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:1771313-1771814 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28128 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28129 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28130 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28131 Neighboring gene uncharacterized LOC105375952 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr9:1928727-1929926 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28132 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:2015793-2016349 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19729 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19728 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28134 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28133 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19730 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19731 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:2018973-2019571 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28135 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:2039759-2040308 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28136 Neighboring gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:2135791-2136058 Neighboring gene RNA, U2 small nuclear 25, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • RNA, 5S ribosomal 279

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_033356.1 

    Range
    101..217
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    1333837..1333953
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    1335525..1335641
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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