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RNA5SP269 RNA, 5S ribosomal pseudogene 269 [ Homo sapiens (human) ]

Gene ID: 100873522, updated on 10-Oct-2023

Summary

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Official Symbol
RNA5SP269provided by HGNC
Official Full Name
RNA, 5S ribosomal pseudogene 269provided by HGNC
Primary source
HGNC:HGNC:43169
See related
Ensembl:ENSG00000239184 AllianceGenome:HGNC:43169
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RN5S269
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Genomic context

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Location:
8q13.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (68695643..68695779)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (69122337..69122473)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (69607878..69608014)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene chromosome 8 open reading frame 34 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr8:69422928-69424127 Neighboring gene ret finger protein like 4A pseudogene 2 Neighboring gene ribosomal protein S15a pseudogene 25 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:69552844-69553829 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr8:69655931-69656489 Neighboring gene NANOG hESC enhancer GRCh37_chr8:69671922-69672423 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:69755751-69756502 Neighboring gene uncharacterized LOC107986951 Neighboring gene Sharpr-MPRA regulatory region 891 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:69837689-69838233 Neighboring gene long intergenic non-protein coding RNA 1592 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:69885119-69885678 Neighboring gene 8q13.2-q13.3 proximal HERV-mediated recombination region Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:69916922-69917442 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_103601

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • RNA, 5S ribosomal 269

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_033342.1 

    Range
    101..237
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    68695643..68695779
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    69122337..69122473
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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