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RNA5SP136 RNA, 5S ribosomal pseudogene 136 [ Homo sapiens (human) ]

Gene ID: 100873404, updated on 8-Nov-2023

Summary

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Official Symbol
RNA5SP136provided by HGNC
Official Full Name
RNA, 5S ribosomal pseudogene 136provided by HGNC
Primary source
HGNC:HGNC:43036
See related
Ensembl:ENSG00000222838 AllianceGenome:HGNC:43036
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RN5S136
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Genomic context

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Location:
3p13
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (72691705..72691811, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (72733601..72733707, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (72740856..72740962, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377161 Neighboring gene uncharacterized LOC102724817 Neighboring gene uncharacterized LOC105377162 Neighboring gene uncharacterized LOC124909396 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:72788360-72788868 Neighboring gene SHQ1, H/ACA ribonucleoprotein assembly factor Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr3:72815716-72816541 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:72816884-72817450 Neighboring gene NANOG hESC enhancer GRCh37_chr3:72818985-72819556 Neighboring gene U2SURP pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • RNA, 5S ribosomal 136

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_033590.1 

    Range
    101..207
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    72691705..72691811 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_011332691.1 Reference GRCh38.p14 PATCHES

    Range
    366614..366720 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    72733601..72733707 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases