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RNA5SP125 RNA, 5S ribosomal pseudogene 125 [ Homo sapiens (human) ]

Gene ID: 100873395, updated on 10-Oct-2023

Summary

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Official Symbol
RNA5SP125provided by HGNC
Official Full Name
RNA, 5S ribosomal pseudogene 125provided by HGNC
Primary source
HGNC:HGNC:43025
See related
Ensembl:ENSG00000201713 AllianceGenome:HGNC:43025
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RN5S125
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Genomic context

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See RNA5SP125 in Genome Data Viewer
Location:
3p24.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (25025007..25025126)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (25027878..25027997)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (25066498..25066617)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124909355 Neighboring gene retinoic acid receptor beta Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:24993785-24994373 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:24996287-24996461 Neighboring gene RNA, 7SL, cytoplasmic 216, pseudogene Neighboring gene Sharpr-MPRA regulatory region 14202 Neighboring gene Sharpr-MPRA regulatory region 8133 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:25288369-25288948 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:25332905-25333494 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr3:25335344-25336543 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr3:25365148-25365656 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr3:25365657-25366165 Neighboring gene U7 small nuclear RNA Neighboring gene cofilin 1 pseudogene 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • RNA, 5S ribosomal 125

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_033572.1 

    Range
    101..220
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    25025007..25025126
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    25027878..25027997
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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