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RNA5SP38 RNA, 5S ribosomal pseudogene 38 [ Homo sapiens (human) ]

Gene ID: 100873370, updated on 10-Oct-2023

Summary

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Official Symbol
RNA5SP38provided by HGNC
Official Full Name
RNA, 5S ribosomal pseudogene 38provided by HGNC
Primary source
HGNC:HGNC:42614
See related
Ensembl:ENSG00000222682 AllianceGenome:HGNC:42614
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RN5S38
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Genomic context

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Location:
13q33.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (106155372..106155490, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (105375703..105375821, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (106807721..106807839, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124903244 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr13:106571137-106572336 Neighboring gene uncharacterized LOC124903245 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr13:106609871-106611070 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:106688889-106689390 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:106752643-106753510 Neighboring gene uncharacterized LOC107984626 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:107001137-107001784 Neighboring gene Sharpr-MPRA regulatory region 6229 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7980 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7981 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr13:107028450-107029649 Neighboring gene long intergenic non-protein coding RNA 460

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • RNA, 5S ribosomal 38

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_033522.1 

    Range
    101..219
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    106155372..106155490 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    105375703..105375821 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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