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RNA5SP98 RNA, 5S ribosomal pseudogene 98 [ Homo sapiens (human) ]

Gene ID: 100873331, updated on 10-Oct-2023

Summary

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Official Symbol
RNA5SP98provided by HGNC
Official Full Name
RNA, 5S ribosomal pseudogene 98provided by HGNC
Primary source
HGNC:HGNC:42896
See related
Ensembl:ENSG00000200028 AllianceGenome:HGNC:42896
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RN5S98
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Genomic context

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Location:
2p12
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (76772909..76773045)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (76778145..76778281)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (77000035..77000171)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374814 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:76800731-76801627 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:76806283-76806782 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:76806783-76807284 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:76829490-76830118 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr2:76851459-76852104 Neighboring gene RN7SK pseudogene 164 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:76880783-76881331 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:77008030-77008622 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:77023220-77023770 Neighboring gene leucine rich repeat transmembrane neuronal 4 Neighboring gene uncharacterized LOC105374815 Neighboring gene LRRTM4 antisense RNA 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • RNA, 5S ribosomal 98

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_033466.1 

    Range
    101..237
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    76772909..76773045
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    76778145..76778281
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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