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RNA5SP90 RNA, 5S ribosomal pseudogene 90 [ Homo sapiens (human) ]

Gene ID: 100873323, updated on 10-Oct-2023

Summary

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Official Symbol
RNA5SP90provided by HGNC
Official Full Name
RNA, 5S ribosomal pseudogene 90provided by HGNC
Primary source
HGNC:HGNC:42888
See related
Ensembl:ENSG00000201671 AllianceGenome:HGNC:42888
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RN5S90
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Genomic context

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Location:
2p23.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (31228312..31228410)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (31272476..31272574)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (31451178..31451276)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:31108994-31109884 Neighboring gene polypeptide N-acetylgalactosaminyltransferase 14 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:31214942-31215442 Neighboring gene NANOG hESC enhancer GRCh37_chr2:31330423-31330924 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:31352777-31353278 Neighboring gene uncharacterized LOC107985861 Neighboring gene calpain 14 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:31437004-31437504 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:31437505-31438005 Neighboring gene uncharacterized LOC124905983 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15549 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15550 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15551 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:31479073-31479900 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15552 Neighboring gene EH domain containing 3 Neighboring gene ribosomal protein L21 pseudogene 70

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • RNA, 5S ribosomal 90

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_033450.1 

    Range
    101..199
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    31228312..31228410
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    31272476..31272574
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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