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RNA5SP87 RNA, 5S ribosomal pseudogene 87 [ Homo sapiens (human) ]

Gene ID: 100873320, updated on 10-Oct-2023

Summary

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Official Symbol
RNA5SP87provided by HGNC
Official Full Name
RNA, 5S ribosomal pseudogene 87provided by HGNC
Primary source
HGNC:HGNC:42885
See related
Ensembl:ENSG00000206882 AllianceGenome:HGNC:42885
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RN5S87
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Genomic context

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Location:
2p24.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (22338886..22339003, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (22374700..22374817, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (22561758..22561875, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene MDM2 oncogene, E3 ubiquitin protein ligase pseudogene Neighboring gene uncharacterized LOC124905953 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:22451969-22452142 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:22547384-22547884 Neighboring gene NANOG hESC enhancer GRCh37_chr2:22582020-22582599 Neighboring gene long intergenic non-protein coding RNA 1830 Neighboring gene uncharacterized LOC107985857 Neighboring gene long intergenic non-protein coding RNA 1884

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • RNA, 5S ribosomal 87

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_033443.1 

    Range
    101..218
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    22338886..22339003 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    22374700..22374817 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases