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PLUT PDX1 associated lncRNA, upregulator of transcription [ Homo sapiens (human) ]

Gene ID: 100861550, updated on 10-Oct-2023

Summary

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Official Symbol
PLUTprovided by HGNC
Official Full Name
PDX1 associated lncRNA, upregulator of transcriptionprovided by HGNC
Primary source
HGNC:HGNC:43698
See related
AllianceGenome:HGNC:43698
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PLUTO; HI-LNC71; PDX1-AS1
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
13q12.2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (27819092..27917291, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (27040207..27138419, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (28393229..28491428, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370129 Neighboring gene VISTA enhancer hs1568 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7509 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:28366547-28367350 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:28368959-28369761 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:28371161-28371843 Neighboring gene GS homeobox 1 Neighboring gene VISTA enhancer hs532 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:28401001-28401500 Neighboring gene uncharacterized LOC124903139 Neighboring gene RNA, U6 small nuclear 73, pseudogene Neighboring gene uncharacterized LOC105370130 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:28497939-28498606 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:28498607-28499273 Neighboring gene pancreatic and duodenal homeobox 1 Neighboring gene ATP synthase F1 subunit epsilon pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Human Pancreatic β Cell lncRNAs Control Cell-Specific Regulatory Networks. Akerman I, et al. Cell Metab, 2017 Feb 7. PMID 28041957, Free PMC Article
  2. Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study. Anney RJ, et al. Am J Med Genet B Neuropsychiatr Genet, 2008 Dec 5. PMID 18951430
  3. A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance. Manning AK, et al. Nat Genet, 2012 May 13. PMID 22581228, Free PMC Article
  4. Genome-wide association study identifies multiple susceptibility loci for pancreatic cancer. Wolpin BM, et al. Nat Genet, 2014 Sep. PMID 25086665, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.
EBI GWAS Catalog
Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.
EBI GWAS Catalog
Genome-wide association study identifies multiple susceptibility loci for pancreatic cancer.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • Human Islet Long Non Coding RNA 71
  • PDX1 antisense RNA 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_047484.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL353195, AL390738

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    27819092..27917291 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    27040207..27138419 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases