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LINC00562 long intergenic non-protein coding RNA 562 [ Homo sapiens (human) ]

Gene ID: 100861549, updated on 10-Oct-2023

Summary

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Official Symbol
LINC00562provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 562provided by HGNC
Primary source
HGNC:HGNC:43706
See related
Ensembl:ENSG00000260388 AllianceGenome:HGNC:43706
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
13q14.2
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (47930153..47932622, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (47150550..47153021, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (48504288..48506757, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene nucleosome assembly protein 1 like 4 pseudogene 3 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr13:48355836-48356352 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr13:48356353-48356869 Neighboring gene ribosomal protein L27a pseudogene 8 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:48387787-48388329 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr13:48431764-48432963 Neighboring gene succinate-CoA ligase ADP-forming subunit beta Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7718 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5330 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7719 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7717 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr13:48575750-48576949 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:48577621-48578218 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:48578817-48579414 Neighboring gene uncharacterized LOC124903172 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:48610990-48611866 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:48611867-48612742 Neighboring gene nudix hydrolase 15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_047492.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL138962, AL157369
    Related
    ENST00000566385.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    47930153..47932622 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    47150550..47153021 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases