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Gm20604 predicted gene 20604 [ Mus musculus (house mouse) ]

Gene ID: 100859931, updated on 8-Feb-2024

Summary

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Official Symbol
Gm20604provided by MGI
Official Full Name
predicted gene 20604provided by MGI
Primary source
MGI:MGI:5305180
See related
Ensembl:ENSMUSG00000041716 AllianceGenome:MGI:5305180
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
MAP-1; Moap1; AK010878-Moap1
Summary
This locus represents naturally occurring readthrough transcription between the neighboring AK010878 (cDNA sequence AK010878) and Moap1 (modulator of apoptosis 1) genes on chromosome 12. The readthrough transcript encodes a protein that shares sequence identity with the upstream gene product but its C-terminal region is distinct due to frameshifts relative to the downstream gene. [provided by RefSeq, Dec 2011]
Expression
Broad expression in CNS E18 (RPKM 12.3), testis adult (RPKM 11.4) and 26 other tissues See more
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Genomic context

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See Gm20604 in Genome Data Viewer
Location:
12 E; 12
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (102706089..102724069, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (102739830..102757810, complement)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene inositol 1,3,4-triphosphate 5/6 kinase Neighboring gene VISTA enhancer mm491 Neighboring gene microRNA 1936 Neighboring gene STARR-seq mESC enhancer starr_33110 Neighboring gene STARR-seq mESC enhancer starr_33116 Neighboring gene predicted gene, 30296 Neighboring gene STARR-positive B cell enhancer ABC_E9862 Neighboring gene STARR-positive B cell enhancer ABC_E9390 Neighboring gene STARR-seq mESC enhancer starr_33118 Neighboring gene modulator of apoptosis 1 Neighboring gene STARR-seq mESC enhancer starr_33119 Neighboring gene lysosomal enzyme trafficking factor Neighboring gene GON7 subunit of KEOPS complex Neighboring gene ubiquitin protein ligase E3 component n-recognin 7 (putative) Neighboring gene BTB domain containing 7 Neighboring gene cytochrome c oxidase subunit 7C, mitochondrial pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Readthrough Gm20604

Included genes: Moap1, Gon7

Clone Names

  • MGC25937, MGC60472

General protein information

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Preferred Names
AK010878-Moap1 protein
Names
AK010878-Moap1 readthrough
Modulator of apoptosis 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001142939.1 → NP_001136411.1  AK010878-Moap1 protein

    Status: VALIDATED

    Source sequence(s)
    AC132315
    UniProtKB/TrEMBL
    F8WIA3, J3QMA2
    Related
    ENSMUSP00000133604.2, ENSMUST00000174651.2
    Conserved Domains (1) summary
    pfam15387
    Location:3 → 70
    DUF4611; Domain of unknown function (DUF4611)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    102706089..102724069 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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