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Gm16833 predicted gene, 16833 [ Mus musculus (house mouse) ]

Gene ID: 100579151, updated on 8-Feb-2024

Summary

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Official Symbol
Gm16833provided by MGI
Official Full Name
predicted gene, 16833provided by MGI
Primary source
MGI:MGI:4439757
See related
Ensembl:ENSMUSG00000085253 AllianceGenome:MGI:4439757
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Gm16833 in Genome Data Viewer
Location:
9 A1; 9 2.46 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (9236293..9260890)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (9236288..9260885)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene transient receptor potential cation channel, subfamily C, member 6 Neighboring gene STARR-seq mESC enhancer starr_23249 Neighboring gene predicted gene, 32014 Neighboring gene STARR-seq mESC enhancer starr_23250 Neighboring gene STARR-seq mESC enhancer starr_23251 Neighboring gene STARR-seq mESC enhancer starr_23252 Neighboring gene STARR-seq mESC enhancer starr_23253 Neighboring gene STARR-seq mESC enhancer starr_23254 Neighboring gene STARR-seq mESC enhancer starr_23255 Neighboring gene progesterone receptor Neighboring gene STARR-seq mESC enhancer starr_23256 Neighboring gene STARR-seq mESC enhancer starr_23257 Neighboring gene Rho GTPase activating protein 42 Neighboring gene STARR-seq mESC enhancer starr_23258 Neighboring gene STARR-seq mESC enhancer starr_23259 Neighboring gene predicted gene, 51662 Neighboring gene predicted gene, 22815

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_045754.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC162803, AK143934
    Related
    ENSMUST00000189204.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    9236293..9260890
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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