U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Dmrt1i Dmrt1 interacting ncRNA [ Mus musculus (house mouse) ]

Gene ID: 100579137, updated on 8-Feb-2024

Summary

Go to the top of the page Help
Official Symbol
Dmrt1iprovided by MGI
Official Full Name
Dmrt1 interacting ncRNAprovided by MGI
Primary source
MGI:MGI:4887388
See related
Ensembl:ENSMUSG00000104600 AllianceGenome:MGI:4887388
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Dmr
Summary
This gene is involved in trans-splicing (PMID 20816665) with a functional gene on chromosome 19, Dmrt1 (Dsx- and Mab3-related transcription factor-1), which plays a role in male sexual development. Dmr mainly forms the 3' UTR in the resulting transcript and provides a stop codon, resulting in a truncated Dmrt1 protein. Trans-splicing involving this gene is suggested to serve as a mechanism of negative regulation of Dmrt1 function. Alternative splicing of this gene results in multiple transcript variants. [provided by RefSeq, Mar 2013]
Expression
Biased expression in colon adult (RPKM 36.0), duodenum adult (RPKM 23.1) and 7 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Dmrt1i in Genome Data Viewer
Location:
5 G2; 5
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (144294733..144297815)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (144357923..144361005)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 2900089D17 gene Neighboring gene brain protein I3 Neighboring gene BAI1-associated protein 2-like 1 Neighboring gene predicted gene 15708 Neighboring gene STARR-seq mESC enhancer starr_14808 Neighboring gene STARR-seq mESC enhancer starr_14810 Neighboring gene predicted gene, 33552 Neighboring gene STARR-seq mESC enhancer starr_14811 Neighboring gene STARR-seq mESC enhancer starr_14813 Neighboring gene predicted gene, 33714

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Meg8-DMR as the Secondary Regulatory Region Regulates the Expression of MicroRNAs While It Does Not Affect Embryonic Development in Mice. Zhang L, et al. Genes (Basel), 2023 Jun 14. PMID 37372444, Free PMC Article
  2. A novel ncRNA gene from mouse chromosome 5 trans-splices with Dmrt1 on chromosome 19. Zhang L, et al. Biochem Biophys Res Commun, 2010 Oct 1. PMID 20816665

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Meg8-DMR as the Secondary Regulatory Region Regulates the Expression of MicroRNAs While It Does Not Affect Embryonic Development in Mice.
    Title: Meg8-DMR as the Secondary Regulatory Region Regulates the Expression of MicroRNAs While It Does Not Affect Embryonic Development in Mice.
  2. These results suggest that novel ncRNA gene Dmr might play a negative regulatory role for Dmrt1 in male sexual development.
    Title: A novel ncRNA gene from mouse chromosome 5 trans-splices with Dmrt1 on chromosome 19.
Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Other Names

  • Dmrt1 related

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within negative regulation of gene expression IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_102372.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (a) contains an alternate 5' terminal exon resulting in a shorter transcript, compared to variant c.
    Source sequence(s)
    HM802239
    Related
    ENSMUST00000196478.5

  2. NR_102373.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (b) contains an alternate 5' terminal exon resulting in a shorter transcript, compared to variant c.
    Source sequence(s)
    AC139636, HM802240
    Related
    ENSMUST00000196370.2

  3. NR_102374.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (c) represents the longest transcript.
    Source sequence(s)
    AC139636, HM802241
    Related
    ENSMUST00000197311.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    144294733..144297815
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases