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GGCTP1 GGCT pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 100528061, updated on 10-Oct-2023

Summary

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Official Symbol
GGCTP1provided by HGNC
Official Full Name
GGCT pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:54609
See related
AllianceGenome:HGNC:54609
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
5q15
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (95833955..95834568, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (96335176..96335789, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (95169659..95170272, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene Rho related BTB domain containing 3 Neighboring gene heat shock protein family D (Hsp60) member 1 pseudogene 11 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22802 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22803 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22804 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22805 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22806 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22807 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:95159178-95159678 Neighboring gene uncharacterized LOC124901029 Neighboring gene glutaredoxin Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22808 Neighboring gene uncharacterized LOC102724720 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22809 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22810 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22811 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22812 Neighboring gene long intergenic non-protein coding RNA 1554

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • gamma-glutamylcyclotransferase pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_028017.2 

    Range
    101..714
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    95833955..95834568 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    96335176..96335789 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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