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CAHM colon adenocarcinoma hypermethylated [ Homo sapiens (human) ]

Gene ID: 100526820, updated on 10-Dec-2024

Summary

Official Symbol
CAHMprovided by HGNC
Official Full Name
colon adenocarcinoma hypermethylatedprovided by HGNC
Primary source
HGNC:HGNC:42860
See related
MIM:615930; AllianceGenome:HGNC:42860
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC00468
Orthologs
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Genomic context

See CAHM in Genome Data Viewer
Location:
6q26
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (163413065..163413950, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (164778231..164779116, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (163834097..163834982, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378099 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:163804727-163805926 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr6:163807926-163809125 Neighboring gene uncharacterized LOC105378100 Neighboring gene Sharpr-MPRA regulatory region 14773 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25416 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25417 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25418 Neighboring gene basic proline-rich protein-like Neighboring gene H3K27ac hESC enhancers GRCh37_chr6:163835002-163835654 and GRCh37_chr6:163835655-163836308 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17772 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17771 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:163844209-163844453 Neighboring gene QKI, KH domain containing RNA binding Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25419 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:163956589-163956770 Neighboring gene NANOG hESC enhancer GRCh37_chr6:163964125-163964810 Neighboring gene Sharpr-MPRA regulatory region 9625 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:164008464-164009663 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:164013504-164014052 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:164032378-164032878 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:164032879-164033379 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:164039878-164041077 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25420 Neighboring gene uncharacterized LOC102724152

Genomic regions, transcripts, and products

General gene information

Other Names

  • colon adenocarcinoma hypermethylated (non-protein coding)
  • long intergenic non-protein coding RNA 468

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_037593.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL356119, BG168587, BQ771676, BX381206

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    163413065..163413950 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    164778231..164779116 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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