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C13orf46 chromosome 13 open reading frame 46 [ Homo sapiens (human) ]

Gene ID: 100507747, updated on 8-Mar-2024

Summary

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Official Symbol
C13orf46provided by HGNC
Official Full Name
chromosome 13 open reading frame 46provided by HGNC
Primary source
HGNC:HGNC:53786
See related
Ensembl:ENSG00000283199 AllianceGenome:HGNC:53786
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 2.7), stomach (RPKM 1.1) and 7 other tissues See more
Orthologs
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Genomic context

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See C13orf46 in Genome Data Viewer
Location:
13q34
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (113926514..113974076, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (113137335..113186857, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (114743219..114743487, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 454 Neighboring gene long intergenic non-protein coding RNA 452 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr13:114616152-114617351 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114622697-114623581 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8045 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114638965-114639466 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114639467-114639966 Neighboring gene SWI/SNF complex interacting GAS6 enhancer non-coding RNA Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114748299-114748799 Neighboring gene RAS p21 protein activator 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114789740-114790579 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114796667-114797608 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr13:114801666-114802865 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:114804717-114805611 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8046 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8047 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114812769-114813560 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:114813561-114814350 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:114829337-114829856 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8049 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8048 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5554 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8050 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5555 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8051 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8052 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8053 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8054 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr13:114838566-114839765 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr13:114848666-114849865 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr13:114852049-114853248 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:114875547-114876182 Neighboring gene ReSE screen-validated silencer GRCh37_chr13:114876854-114877008 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr13:114878083-114878678 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr13:114878884-114880083 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114880307-114881171 Neighboring gene uncharacterized LOC124903221 Neighboring gene RASA3 intronic transcript 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

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Homology

Clone Names

  • FLJ35331

General protein information

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Preferred Names
uncharacterized protein C13orf46

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001365455.2 → NP_001352384.1  uncharacterized protein C13orf46

    Status: VALIDATED

    Source sequence(s)
    AUXG01000135, BX537329, FP565324
    Consensus CDS
    CCDS91842.1
    UniProtKB/Swiss-Prot
    A0A1B0GUA9
    Related
    ENSP00000490032.2, ENST00000636427.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    113926514..113974076 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047429985.1 → XP_047285941.1  uncharacterized protein C13orf46 isoform X3

    UniProtKB/Swiss-Prot
    A0A1B0GUA9

  2. XM_047429981.1 → XP_047285937.1  uncharacterized protein C13orf46 isoform X1

  3. XM_047429983.1 → XP_047285939.1  uncharacterized protein C13orf46 isoform X1

  4. XM_047429982.1 → XP_047285938.1  uncharacterized protein C13orf46 isoform X1

  5. XM_047429984.1 → XP_047285940.1  uncharacterized protein C13orf46 isoform X2

  6. XM_006719995.4 → XP_006720058.4  uncharacterized protein C13orf46 isoform X4

  7. XM_047429986.1 → XP_047285942.1  uncharacterized protein C13orf46 isoform X5

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_011332698.1 Reference GRCh38.p14 PATCHES

    Range
    9109..37102 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054331713.1 → XP_054187688.1  uncharacterized protein C13orf46 isoform X7

  2. XM_054331712.1 → XP_054187687.1  uncharacterized protein C13orf46 isoform X6

  3. XM_054331711.1 → XP_054187686.1  uncharacterized protein C13orf46 isoform X3

    UniProtKB/Swiss-Prot
    A0A1B0GUA9

  4. XM_054331715.1 → XP_054187690.1  uncharacterized protein C13orf46 isoform X8

  5. XM_054331709.1 → XP_054187684.1  uncharacterized protein C13orf46 isoform X1

  6. XM_054331710.1 → XP_054187685.1  uncharacterized protein C13orf46 isoform X2

  7. XM_054331714.1 → XP_054187689.1  uncharacterized protein C13orf46 isoform X4

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    113137335..113186857 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054373971.1 → XP_054229946.1  uncharacterized protein C13orf46 isoform X11

  2. XM_054373967.1 → XP_054229942.1  uncharacterized protein C13orf46 isoform X9

  3. XM_054373969.1 → XP_054229944.1  uncharacterized protein C13orf46 isoform X9

  4. XM_054373968.1 → XP_054229943.1  uncharacterized protein C13orf46 isoform X9

  5. XM_054373970.1 → XP_054229945.1  uncharacterized protein C13orf46 isoform X10

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A1B0GUA9.2 GenPept UniProtKB/Swiss-Prot:A0A1B0GUA9

Gene LinkOut

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