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LINC03103 long intergenic non-protein coding RNA 3103 [ Homo sapiens (human) ]

Gene ID: 100507527, updated on 8-Mar-2024

Summary

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Official Symbol
LINC03103provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 3103provided by HGNC
Primary source
HGNC:HGNC:48330
See related
Ensembl:ENSG00000267465
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
THEG5
Expression
Restricted expression toward testis (RPKM 3.1) See more
Orthologs
all
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Genomic context

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See LINC03103 in Genome Data Viewer
Location:
19q12
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (31588174..31593785)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (34106779..34112390)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (32079080..32084691)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene TSHZ3 antisense RNA 1 Neighboring gene uncharacterized LOC124904794 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:31879539-31880040 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr19:31909131-31910077 Neighboring gene Sharpr-MPRA regulatory region 8466 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:31939361-31939861 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:31990532-31991116 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:31991117-31991701 Neighboring gene long intergenic non-protein coding RNA 2841 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr19:32043944-32045143 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr19:32065114-32065673 Neighboring gene ReSE screen-validated silencer GRCh37_chr19:32129182-32129347 Neighboring gene RNA, 5S ribosomal pseudogene 471 Neighboring gene uncharacterized LOC105372361

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Homology

Other Names

  • testis highly expressed protein 5

Clone Names

  • AC011525.4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_172934.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC011525
    Related
    ENST00000592788.6

  2. NR_172935.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC011525
    Related
    ENST00000664056.1

  3. NR_172936.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC011525
    Related
    ENST00000655260.1

  4. NR_172937.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC011525
    Related
    ENST00000663546.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    31588174..31593785
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    34106779..34112390
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001205273.3: Suppressed sequence

    Description
    NM_001205273.3: This RefSeq was removed because currently there is support for the transcript but not for the protein.

  2. NM_001278575.3: Suppressed sequence

    Description
    NM_001278575.3: This RefSeq was removed because it is now thought that this gene does not encode a protein.

  3. NM_001278576.3: Suppressed sequence

    Description
    NM_001278576.3: This RefSeq was removed because it is now thought that this gene does not encode a protein.

  4. NM_001278577.3: Suppressed sequence

    Description
    NM_001278577.3: This RefSeq was removed because it is now thought that this gene does not encode a protein.

  5. NM_001278578.3: Suppressed sequence

    Description
    NM_001278578.3: This RefSeq was removed because it is now thought that this gene does not encode a protein.
Nucleotide Protein
Heading Accession and Version

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