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LINC02853 long intergenic non-protein coding RNA 2853 [ Homo sapiens (human) ]

Gene ID: 100507480, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02853provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2853provided by HGNC
Primary source
HGNC:HGNC:54390
See related
Ensembl:ENSG00000259245 AllianceGenome:HGNC:54390
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 4.6) See more
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Genomic context

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Location:
15q14
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (36046029..36049529)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (33851307..33854807)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6292 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6293 Neighboring gene Sharpr-MPRA regulatory region 8232 Neighboring gene DPH6 divergent transcript Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9191 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr15:36165880-36167079 Neighboring gene uncharacterized LOC105370766 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9192 Neighboring gene microRNA 4510 Neighboring gene uncharacterized LOC102724214 Neighboring gene uncharacterized LOC105370767

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_184053.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC040918
    Related
    ENST00000560056.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    36046029..36049529
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    33851307..33854807
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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